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Archive for August, 2019

The Extinct Parallel Wolves

xenocyon and cynotherium

Depiction of Xenocyon lycaonoides (in the back) with Cynotherium sardous (in the front).

The “hunting dogs” are sister lineage to the true wolves. They were once widespread across Eurasia, Africa, and into North America. Today, the lineage is survived by two species, the dhole (Cuon alpinus) and the African wild dog or painted dog (Lycaon pictus).

But during the Pleistocene, a third species, much larger than two extant species, was ubiquitous. This species, called Xenocyon lycaonoides, was found all over Africa and all over Eurasia.  It ranged into North America, where its remains have been described as Xenocyon texanus.

It was long accepted in paleontology that the dhole and African wild dog derived from Xenocyon lycaonoides, but new evidence that shows the African wild dog deriving from a Pliocene African species called Lycaon sekowei casts that idea into doubt. Further, because the dhole and African wild dog are so closely related to each other, it is doubtful that either derives from Xenocyon.

My take, based upon simple chronology and the genomic analysis of living species, is that Xenocyon and its offshoots were a sister lineage to that which leads to the dhole and African wild dog.

The best way to think of Xenocyon lycaonoides is that it was the gray wolf before there was a gray wolf. It was a pack-hunting canid that was able to expand its range over a wide range. It was roughly the size of a large northern gray wolf, and it would have been a formidable predator of large game.

On islands, though, Xenocyon evolution went a bit weird. On Java, two descendants of Xenocyon lycaonoides evolved. One was Merriam’s dog (Megacyon merriami). It was even larger than the mainland form, but over time, it was replaced by a smaller form that averaged 22 kg (48.5 pounds) called the Trinil dog (Mececyon trinilensis). A new analysis of these Pleistocene canids places both in the genus Xenocyon (which fits a cladistic classification model) and shows that the smaller Trinil dog derived from the larger Merriam’s dog.  Increased competition from tigers and other large predators forced the larger Merriam’s dog to target smaller prey, and over time, they became smaller.

Anothe even more extreme insular form of Xenocyon evolved on the Pleistocene island of Corsica-Sardinia. This island is now two islands in the Mediterranean, but during the Pleistocene, they were connected to each other. On that Pleistocene island, Xenocyon lycaonoides became isolated on an island that was full of small prey, especially a species endemic pika.  This Corsica-Sardinian canid became a specialist in hunting burrowing prey.  It had the ability to thrust its head out laterally better than any living canid, which would have given it an advantage in catching quick-moving prey that would take refuge in burrow.

This species is called the Sardinian dhole (Cynotherium sardous), but it is not directly related to the modern dhole. It was the size of a golden jackal or a small coyote, and it went extinct after humans colonized Corsica-Sardinia at the very end of the Pleistocene. It was the last of the Xenocyon derivatives to go extinct.

The Mosbach wolf (Canis mosbachensis) was a contemporary of the larger Xenocyon lycaonoides.  It was smaller canid that varied in size from an Eastern coyote to an Indian wolf.  It eventually would evolve into the larger gray wolf, which would have a similar evolutionary trajectory to the Xenocyon. It would spread over much of the world. Many regional forms would evolve.

Domestication, of course, would give the gray wolf lots of opportunities for weirdness to come about. Yes, as weird as the so-called Sardinian dhole was, it was never as bizarrely put together as some of our domestic dog breeds.

These extinct “wolves in parallel” do tell us a lot about how a large canid can radiate across the a broad swathe of the planet and adapt to regional conditions and thrive.

 

 

 

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Clive in Summer Pelt

I haven’t posted much of Clive lately because he’s been shedding out his winter coat. He does not have mange. He really does shed down to these levels.  The areas where he looks hairless are where the fur is about as long as a greyhound’s coat, but it’s much thicker and softer.

This should give you an idea that the red fox is not a bulky, hulking creature at all.

clive in summer pelt

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Keeping the lines going

erika on the lawn

Update: I am pro-greyhound racing and pro-NGA.  (I wrote a post opposing the Florida amendment last October.) The reason this litter will be AKC registered is that they are not being bred for professional racing. They are being bred for sport and coursing homes. My partner has years of experience working at racing greyhound kennels, and we are very sighthound savvy.  We will not let someone walk away with a driven puppy without fully explaining the issues in raising and civilizing such a creature. The parents are going to be health tested (the Embark samples are in the mail).  I don’t want racing greyhounds to wind up like otterhounds, where there are scarcely any left now that their main reason for existence has been banned. 

Greyhound racing in the United States is on its way out. Florida was the last large state that had lots of tracks going, but in the 2018 general election, Florida voters decided to phase out professional greyhound racing.

In the short run, these dogs are going to filter their way into adoption. The vast majority of them will find homes. And every single one of them will be neutered.

Because only a handful of states will have racing, it is very unlikely that thousands of racing greyhounds will be bred every year. When this generation of adopted out greyhounds dies, the greyhound owning public will not have many options.

Yes, they can buy a show-bred greyhound, go out West and get a coursing dog, or they get a whippet or borzoi.  I suspect that galgos from Spain will be imported over here in very high numbers.

But if they want a sport-bred greyhound that derives from racing lines, they will essentially be out of luck.  However, they won’t be.

Several of us are close enough to forward-thinking racing dog owners to get our hands on intact racing greyhounds that we will be breeding. Erika is scheduled to be bred on her next heat, and we already have the sire picked out. Stay tuned for updates on him.

And we will do what we can to keep the American racing greyhound lines alive the best we can. We already have lots of homes lined up for this coming litter, so the demand for these dogs is quite high. The litter will be AKC-registered, so they can enter the “legit” greyhound population and do AKC-sanctioned events.

We will be helping these lines see a future beyond greyhound racing, and I have to say that I’m proud be part of this project.

So yeah, I’m deep in show dogs now, but we are working on keeping some nice working lines of a breed going into the future.

I’m pretty excited about it.

 

 

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Dare’s Embark

dare floppy ears

Dare’s DNA analysis came back from Embark.  She is clear of all genetic diseases that the company tests for, and she is not a carrier of any either.

She does not carry long-coat. There was possibility that she did, because long-coats occur on both sides of her pedigree.

She does, however, carry for recessive black. One great grandsire was a black dog.

dare coat embark

Her genetic COI is 32 percent:

Dare COI Embark

Remember that this breed is derived from very tight breeding at its foundation, and having a COI this high is to be expected.

In the MHC/DLA genes analyzed, though, she has high diversity, so she should have a good and effective immune system.

mhc dare 1

mhc dare 2

Her deep ancestry is pretty typical of European dog breeds. Her mtDNA haplotype is A361/409/611, which is very common in German shepherds.  It part of the A1b haplogroup, which has been traced to the original domestication in Central Asia and entered Europe during the Bronze Age.

So we can find out lots of interesting things about purebred dogs through these DNA tests. Not only do we know a lot about her risk factors and carrier status of certain diseases, we know a lot about her deep ancestry as well.

 

 

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Papers

dare papers

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Orphans of the Disused House

young raccoons

Life and death act out their forces on nature and man. And so it went with this old house. No one lives there any more. The lawn has grown thick with meadow grasses and multiflora rose, and no one seems to remember much about who lived there or the dramas of existence that played out within its walls.

But one would be wrong to think such an edifice would be without life. Two orphaned raccoons, both brothers, wound up commandeering the premises one sweltering hot July evening.  Their mother had been crushed on the highway. She darted out just as a massive semi came racing down the lane, and she was exited this mortal coil in a loud thud and the whirring of tires upon bone and ligament.

They were well-weaned when she was killed, and they spent the better part of the summer learning to be proper raccoons. They negotiated the lazy streets and moved onto quite country lanes, where garbage was sometimes illegally dumped.  They avoided the barking dogs and the murderous boar racccons. They bluff-charged cats and swatted away slobbering opossums.

For weeks, they meandered about, but one day, the came across something quite nice. One a quiet country lane, an old house stood.  And to the curious young raccoons, it was a beacon. It was like finding an island full of hidden treasure. It smelled so interesting and so beguiling.

Weather had worn down some siding near the front door. All it took was a bit of chewing and pulling, and the two brothers had made themselves a good entry hole.

Upon entering the house the found it full of old tables and chairs and couches from the time Gerald Ford was president.  Scores of insects, including beetles and moths, had taken up residence in the house, and these creatures were a welcome nighttime repast for the two brothers.

A fox squirrel had made her nest in the attic, and her four little babies also were a nice snack, but after going through the house in search of food, the two brothers realized they had stumbled upon a true treasure.

Most raccoons den up in trees. A few unfortunate souls use burrows that were dug by other creatures.  Some raccoons do well in old barns, and countless ones have taken up residence in chimneys.

Normally, those that choose to live in human created structures find themselves evicted pretty quickly, but no one cared about this old house. A car might pass by the structure twice or three times a day, usually the crotchety old man who lived at the end of the road. He would curse about the eyesore had to pass when journeyed back to civilization, but he wouldn’t do anything about it. He would just motor on in disgust and go on with his day.

So the two brothers had found themselves a raccoon castle, and for the rest of the summer, they used it as their retreat. At night, they would make sorties into true dwelling civilization, and by morning, they would be at home in the old house.

And so through the summer, the two brothers lived well in their castle, but this situation could not go on forever. They could not know that the coming winter would bring on the rut, the great war between the boars. They could not know that someday they would be tearing at each other’s faces.

But for now they curled up beside each other as the sun cast down into the smudgy old windows. The light it cast in the house was ethereal. Ancient dust rose into the beams of light, casting about like some forlorn glitter.

They snuggled into each other as the hissing of dog day cicadas buzzed out from the adjacent walnut trees.  The youthful summer was now, and they could thrive and wallow in it.

But just as all things with man and nature, the summer of peace would be fleeting on.

But in youthful raccoon existence, there is no time to think of such matters or even to consider them. That something is temporal is not even understood.

And so they slept in the bliss of the current hour as if it were all that lay ahead. To be is to be, and one must be right now and not in the horrors of the coming future.

They were young raccoons in that state of ignorant bliss, a state our kind secretly admires though publicly disdains as if we all didn’t know the real truth.

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Towards a nuanced understanding of inbreeding and dogs

 

beowulf

Humans have an aversion to inbreeding. We find the idea of two humans from the same family marrying and having children quite disgusting.

We also know that wild dogs have strong inbreeding avoidance behavior. Wolves and African wild dogs generally avoid mating with blood relatives. Most domestic dogs will mate with their relatives without reservation, and inbreeding has been a tool that dog breeders have used for centuries to establish type and promote homogeneity in their strains.

I have been a critic of inbreeding domestic dogs, but I now realize that I was cherry-picking the science a bit and playing up to human aversion to inbreeding to give a fully nuance and accurate understanding of what inbreeding can do to domestic dogs.

Inbreeding does tend to reduce MHC haplotype diversity over time, which can make dogs more susceptible to various maladies.  It also can increase the chance of deleterious recessive alleles from being inherited homozygously.  All of these are potential risks from inbreeding.

However, I would be remiss to say that inbreeding has not always been a horrible.  Indeed, certain breeds have been founded through a rigorous inbreeding and selection process that surely cannot be thought of as entirely disastrous to the strain.

A few years ago, I came across a book called Working Sheep Dogs: A Practical Guide to Breeding, Training and Handling by Tully Williams. In the text, Williams refers to Kyle Onstott’s work on dog breeding in which Onstott mention an experiment at the Wistar Institute involving rats. A “Miss King,” writes Onstott, bred rat siblings for twenty generations with a strong selection for vigor and stamina, and after twenty generations, she produced a strain of rats that were longer-lived, larger, and generally healthier than the average laboratory rat.

Onstott was a dog breeder and novelist, and his book on dog breeding was considered revolutionary when it was published in 1962. It is called The New Art of Breeding Better Dogsand I have been trying to get my hands on a copy.  However, I was able to glean from the names mentioned in Williams’s quote of Onstott that the “Miss King” of the Wistar Institute is Helen Dean King.  Dr. (not “Miss”) King was one of the early researcher on the question of inbreeding, and one of leading lights of the Wistar Institute’s rat breeding experiments.

I was able to find her study in which she was able to create the super rats strain through inbreeding, and yes, she was able to do so through rigorous selection for vigor.

In dogs, it is difficult to find a similar experiment, but then I realized one was quite literally staring me in the face.

Most are unaware that German shepherd dogs are all quite closely related to each other. Yes, they appear to have a lot genetic diversity, because we have all these quite different working and show-bred forms, but they all derive from a very similar inbreeding experiment to the one that Dr. King performed at the Wistar Institute.

Max von Stephanitz based the breed upon a Thuringian sheepdog named Horand von Grafrath, which he then bred to Bavarian and Swabian/Württemberg sheepdogs. He then tightly bred upon the progeny. Indeed, the entire breed is based off of three grandsons of Horand. They were Beowulf, Pilot, and Heinz von Starkenburg. They were bred mostly to other descendants of Horand, and there was strong selection for temperament and vitality in the population. It is in these foundations of the breed that wolf may have been added, but the breed still derives from these three grandsons of a single dog.

We can have lots of debates about this in the comments, but the German shepherd dog as an entire breed is fairly healthy for a large breed dog.  In that inbred population, the deleterious allele that leads to a degenerative myelopathy was part of the founders, and the breed itself does have that issue.  Some eye issues were also part of the founding population.

However, if inbreeding were always such a terrible thing, every dog in the breed would be a genetic basket case. Regardless of what one might think about show dogs, the working police and military dogs derive from this exact same inbred population, and it would be folly to say these dogs lacked vigor or were universally unhealthy and unsound creatures. Indeed, it can be argued that the most useful dog ever bred was the German shepherd dog. It has that much utility in a variety of situations.

Now,  I am not saying that inbreeding problems don’t exist. I am saying that we need a nuanced understanding of what inbreeding can do to dog populations, and it is not universally a horrible thing.

Inbreeding and rigorous selection can be a good thing for a strain.  Of course, I know there are breeds that do need some genetic rescue. The Doberman pinscher was founded in much the same way as the German shepherd, using a much more diverse group of domestic dogs in the foundation strain. However, the breed suffers so much from inherited DCM that it an outcross program could very well be justified.

But those of us who advocate rationalism and science in understanding and caring for dogs must keep an open mind. We must look at all the objective science and avoid appeals to human prejudice.

That’s what I’ve tried to do here. I am correcting some of my earlier errors, and I hope this helps lead to a more nuanced view of the subject.

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